base64 decode

I was playing around with launching the taverna workflow engine programmatically. The answers it spat back out all looked slightly weird.

IyMjIyMjIyMjIyMjIyMjIyMjIyMjIyMjIyMjIyMjIyMjIyMjIyMjIwojIFByb2dyYW06IGFudGln
ZW5pYwojIFJ1bmRhdGU6IFRodSAxOSBKdW4gMjAwOCAxMjoyNDo0MgojIENvbW1hbmRsaW5lOiBh
bnRpZ2VuaWMKIyAgICAtc2VxdWVuY2Ugc3dpc3Nwcm90OlAwNDYzNwojICAgIC1vdXRmaWxlICIv
ZWJpL2V4dHNlcnYvc29hcGxhYi13b3JrL3NvYXBsYWIyX2VtYm9zczQvU0FOREJPWC9bcHJvdGVp
bl9tb3RpZnMuYW50aWdlbmljXS0yNTc4NTMyNi

According to the taverna user group this is cos the answer is encoded in base64. To see how it should look, stick it through mmencode:

mmencode -u name.txt

A somewhat more comprehensable answer should emerge:

########################################
# Program: antigenic
# Rundate: Thu 19 Jun 2008 12:24:42
# Commandline: antigenic
#    -sequence swissprot:P04637
#    -outfile "/ebi/extserv/soaplab-work/soaplab2_emboss4/SANDBOX/[protein_motifs.antigenic]-25785326.11a9e381fc5.67f8/o_outfile"
#    -auto
# Report_format: motif
# Report_file: /ebi/extserv/soaplab-work/soaplab2_emboss4/SANDBOX/[protein_motifs.antigenic]-25785326.11a9e381fc5.67f8/o_outfile
########################################

#=======================================
#
# Sequence: P53_HUMAN     from: 1   to: 393
# HitCount: 15
#=======================================

Now to find the java libraries to do this in code.