Pull files out of a runfolder and stick them here named by cycle

Won't mean anything to anyone but me probably...

for ((i=1; i<=36; i++)); do for j in ./C$i.1/*; do cp $j ./`basename $j .tif`_$i.tif; done; done

Make a GA style folder:

for ((i=1; i<=36; i++)); do mkdir ./lane1tile1/C$i.1; for j in ./C$i.1/s_1_1_*; do cp $j ./lane1tile1/C$i.1/`basename $j`; done; done