Openmoko DNS settings

After several promising starts, I seem to have networking working reasonably reliably now. This is all available in the wiki on the site - so this is really just to remind me what the settings are for the resolv.conf after my office network moved to openDNS recently.

Home (wireless config)

echo nameserver 208.67.222.222
echo nameserver 208.67.220.220

Work (usb to computer)

search my-work.domain
nameserver 10.1.1.11
nameserver 10.1.1.12
nameserver 10.1.1.11
nameserver 10.1.1.12

No idea as yet how to automagically set these. Though this should get better. The network setup at work isn't helping though.

Quick bash script (check zero sized file) for reference

This is a quick bash script I wrote. Pasting it here for reference. It reads a bunch of ipar intensity files processes them with swift, and calibrates them with the swift calibrator. It checks if the file is zero sized (that's because I was updating a set of files some of which had failed). The:

   if [ ! -s /scratch/user/"$lane"_"$tile".fastq.pf.calibrated ]

That checks that a file /is/ zero sized. And only runs swift if it is.

sourcedir=/ADIRECTORY

for lane in {1..8}
do

for tile in {1..100}
do
 if [ ! -s /scratch/user/"$lane"_"$tile".fastq.pf.calibrated ]
   then
   nice cp "$sourcedir"/s_"$lane"_*0"$tile"_int.txt.p.gz /scratch/user/input.gz
   nice gzip -d /scratch/user/input.gz
   nice ./ipar2gapipelineint /scratch/user/input "$sourcedir"/s_"$lane"_*0"$tile"_pos.txt /scratch/user/gaint
   nice ./swift --purity_threshold 0.56 --intfile /scratch/user/gaint --ref ./phi.fa --optical_duplicates_distance 6 --optical_duplicates_mismatches 8 --fastq /scratch/user/"$lane"_"$tile".fastq --phasing_window 10 --phasing_iterations 3 --align_every 50
   nice ./QualityCalibration/quality_remap --in /scratch/user/"$lane"_"$tile".fastq.pf --mapfile ./QualityCalibration/firecrest_1_3_2_fixedtable --out /scratch/nava/"$lane"_"$tile".fastq.pf.calibrated
   rm /scratch/user/input
   rm /scratch/user/gaint
   rm /scratch/user/*.fastq.pf
   rm /scratch/user/*.fastq.nonpf
 fi
done
done