Friday, July 30, 2010
Quick and Dirty histogram in awk
awk '{histogram[int(($2*100)/100)]++;}END{for (i in histogram) { print i, histogram[i] }}' somerandomfilewithatagandcountdataincol2 | sort -n -k 1 > hist
Wednesday, July 28, 2010
Getting started with Cython on Centos 5.4 64Bit
Centos is a nightmare. OK so first up I wanted to do with with Python 2.6 for which there is no official Centos package. So get the geekymedia repos which has a version of Python 2.6 which will install along side the existing 2.4 (and can be access as python26) here: here.
Then download the Cython tarball. Before you build Cython make sure you setup compile flags for 32bitness and make sure python 2.6 gets used i.e.
export CFLAGS="-m32 -march=i386"
export PYTHON="python26"
then run python26 setup.py install in the Cython directory. I had to do some other hacking of -m32 and -march=i386 on to things, but I think doing it this way should work. That should build and install Cython.
Put the following example in a file called demo.pyx:
Then make the following Makefile. Make sure you have tabs!
Then just type make and it should build a binary called demo.
Then download the Cython tarball. Before you build Cython make sure you setup compile flags for 32bitness and make sure python 2.6 gets used i.e.
export CFLAGS="-m32 -march=i386"
export PYTHON="python26"
then run python26 setup.py install in the Cython directory. I had to do some other hacking of -m32 and -march=i386 on to things, but I think doing it this way should work. That should build and install Cython.
Put the following example in a file called demo.pyx:
cdef extern from "math.h":
double sin(double)
cdef double f(double x):
return sin(x)
print f(2.0)
Then make the following Makefile. Make sure you have tabs!
demo: demo.pyx
cython demo.pyx --embed
gcc -g -pthread -m32 -march=i386 demo.c -L/usr/lib -lm -lpython2.6 -o ./demo -I/usr/include/python2.6
Then just type make and it should build a binary called demo.
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